Remove SegmentBufferReader; unify on AsyncPipeReaderInput
Migrates all SignalR chunked streaming receive logic to AsyncPipeReaderInput, fully removing SegmentBufferReader and SegmentBufferReaderInput from the codebase. Updates all references, deserialization paths, and documentation to reflect the new unified primitive. Marks ADR-0003 as accepted (partially executed), closes related TODOs, and clarifies protocol docs. Sets DoubleBuffered as the default FlushPolicy. No wire format or behavioral changes; all tests pass.
Update ID format to use per-repo prefixes and random suffix
Migrated all issue, TODO, and decision IDs to a new 4-part format: <PREFIX>-<TOPIC>-<TYPE>-<RAND>. Added per-repo prefix declarations in copilot-instructions.md and documented conventions in REPO_PREFIXES.md. Updated all topic registries, logs, cross-references, and documentation to use the new format. Introduced MIGRATION_ID_MAPPING.md for old-to-new ID mapping. Enhanced skills and protocol audit logic to validate and enforce per-repo prefixes and topic codes at runtime. Clarified Framework-First doctrine and ensured all references are unambiguous.
ADR skill, status vocab, and security log fixes
- Enhanced `adr-author` skill and ADR template based on first use: clarified opinion sharing, cross-referencing, index updates, and parallel session handling; rewrote ADR template pointer and added first repo-wide ADR.
- Updated skill loading: only `docs-discovery` and `docs-check` pre-loaded; others lazy-loaded; removed `version` from SKILL.md frontmatters.
- Simplified issue/TODO status to `Open`, `InProgress`, `Closed`; updated archiving logic and migrated all entries.
- Added forward-slash glob pattern rule to `docs-discovery/SKILL.md`.
- Closed LOG-I-9 and LOG-I-10: DEBUG-gated sensitive log lines, fixed typo, and cross-referenced new ADR.
- Various documentation and index improvements.
Simplify Status field; add docs-archive skill & archiving
- Reduced Status field values in issues/TODOs to Open, InProgress, Closed; updated all affected entries to new convention
- Introduced docs-archive skill for rotating Closed entries into year-bucketed archive files; process is user-invoked or LLM-suggested, never automatic
- Expanded docs-discovery and protocol documentation to clarify archive file handling and on-demand loading
- Updated session setup: only reactive skills pre-loaded, user-gated skills now lazy-loaded for token efficiency
- Clarified and documented Status update workflow, archive eligibility, and lifecycle
- Updated all relevant issue/TODO files to match new Status conventions and archival process
Refactor docs: topic folders, TOON, XCUT, protocol sync
- Migrated all topic documentation into dedicated folders with canonical `README.md`, `ISSUES.md`, and `TODO.md` per topic (e.g., `LOGGING/`, `SIGNALR/`, `BINARY/`, `TOON/`).
- Added comprehensive TOON serializer documentation: design, format, options, attributes, inference, issues, and TODOs.
- Introduced `XCUT` folder for cross-cutting issues and TODOs, with canonical entries and topic cross-references.
- Updated all references and navigation to use new folder-based doc paths; fixed links and clarified doc structure.
- Enhanced AI agent protocol: enforce session skill preloading, `[LOADED_DOCS: ...]` short-name prefix, and mandatory `docs-check` skill for doc/code sync.
- Updated `.csproj` to include all `README.md` files for IDE visibility.
- Improved and clarified SignalR, grid, and project-level documentation.
- Minor code/test tweaks and doc content corrections for consistency.
Update protocol, docs-discovery skill, and doc layering
- Switched AI AGENT CORE PROTOCOL to new `[LOADED_DOCS: N files (+K this turn: ...)]` prefix format in all primary instruction files; updated examples and enforcement details.
- Added `docs-discovery` skill for proactive .md doc loading before code search; documented usage and integration as a shared agent skill.
- Introduced `## Protocol History` section and `LLM_PROTOCOL_DECISIONS.md` decision log for cross-repo protocol change tracking.
- Expanded protocol-audit skill and `REPOS.md` to support 8 instruction files (primary/inherit split), new invariants, and known issues.
- Added/updated structured TODO and issues docs for serialization, logging, and SignalR binary protocol.
- Improved cross-references, doc layering, and clarified documentation-first coding workflow.
- Various minor doc clarifications and formatting for protocol consistency.
Loretta